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Water Structure and Science Site Map

Preface and site entrance

The water molecule

The structure of the water molecule

Water's lone pairs
Water electronic structure
Water dimer
Water models
Water reactivity

Easier introduction to the water molecule

H2COW [Plug-in, ActiveX] animation

The molecular orbitals of water, H2O

Hydrogen bonding in water

Hydrogen bonds
Water hydrogen bonds
Hydrogen bond cooperativity
Rearranging hydrogen bonds
Bifurcated hydrogen bonds
Information transfer

Easier introduction to hydrogen bonding in water

(H2O)2 COW [Plug-in, ActiveX] animation

 All-cis (H2O)5, COW [Plug-in, ActiveX] animation

 Global minimum, COW [Plug-in, ActiveX] animation

The molecular orbitals of a water dimer, (H2O)2

The molecular orbitals of a water cyclic pentamer, (H2O)5

The Phase Diagram of water

Phase diagrams

The phase diagram of water

Density change
Triple points
Ice phases

Ice IChime animation

Hexagonal ice

Ice nucleation and growth
Is ice slippery?

Ice IChime animation

Ice Ih/1c (Ice Isd) Chime animation

Ice II Chime animation

Ice III Chime animation

Ice IV Chime animation

Ice V Chime animation

Ice VI Chime animation

Ice VII Chime animation

Ice VIII Chime animation

Cubic ice (Ic/XIc)

Alternating 2-D Layers (Ice Ic/ Ice Ih; Ice Isd)

Ice-two

Ice-three

Ice-four

Ice-five

Ice-six

Ice-seven

Ice-eight

Ice-nine

Ice X Chime animation

Ice XI Chime animation

Ice XII Chime animation

Ice XIII Chime animation

Ice XIV Chime animation

Ice-ten

Ice-eleven

Ice-twelve

Ice-thirteen

Ice-fourteen

Ice-fifteen

Amorphous ice and glassy water

Cold metastable water
Ultraviscous water and the glass transition temperature
Low-density amorphous ice (LDA)
High-density amorphous ice (HDA)
Very-high density amorphous ice (VHDA)

Clathrate ices I, II and H

 Clathrate ice I, Chime animation

 Clathrate ice II, Chime animation

 Clathrate ice H, Chime animation

CS-I clathrate
CS-II clathrate
HS-III clathrate
Other structures

Molecular vibration and absorption of water

Water and global warming

Absorption spectra of gaseous, liquid and solid water
The vibrational spectra of liquid water
The visible and UV spectra of liquid water

Water ionization, 2H2O = H3O+ + OH-

The ionic product, Kw

pH

Variation in Kw with temperature and pressure
Hydrogen ions
Hydroxide ions
Grotthuss mechanism
Diffusion of hydrogen ions
Diffusion of hydroxyl ions

H3O+ COW [Plug-in, ActiveX] animation

OH- COW [Plug-in, ActiveX] animation

The molecular orbitals of the H3O+ and OH- ions

H3O2- COW [Plug-in, ActiveX] animation

 Asymmetric H5O2+, COW [Plug-in, ActiveX]

 Symmetric H5O2+, COW [Plug-in, ActiveX]

The molecular orbitals of the hydrated hydroxide ion, H3O2-

The molecular orbitals of the dihydronium ions, H5O2+

Water at interfaces

Confined water

Hydrophobic confinement

Hydrophilic confinement
Capillary rise

Interfacial water and water-gas interfaces

The surface of water
Thermodynamics of the liquid-gas surface for water

Nanobubbles

Evidence for nanobubbles
The effect of surface charge on surface tension and nanobubble stability

Sixty-seven anomalous properties of water

The range of anomalous properties of water

Phase anomalies P1-P12

Water has unusually high melting point
Water has unusually high boiling point
Water has unusually high critical point
Solid water exists in a wide variety of stable structures
The thermal conductivity of ice reduces with pressure
The structure of liquid water changes at high pressure
Supercooled water has two phases
Liquid water is easily supercooled but glassified with difficulty
A liquid water phase exists at very low temperatures
Liquid water may be easily superheated
Hot water freezes faster than cold water; the Mpemba effect
Warm water vibrates longer than cold water

Density anomalies D1-D20

The density of ice increases on heating (up to 70 K)
Water shrinks on melting
Pressure reduces ice's melting point
Liquid water has a high density that increases on heating
The surface of water is more dense than the bulk
Pressure reduces the temperature of maximum density
There is a minimum in the density of supercooled water
Water has a low thermal expansivity
Water's thermal expansivity reduces at low temperatures
Water's thermal expansivity increases with increased pressure
The number of nearest neighbors increases on melting
Nearest neighbors increases with temperature
Water has unusually low compressibility
The compressibility drops as temperature increases
The compressibility-temperature maximum
The speed of sound increases with temperature up to 74°C
The speed of sound may show a minimum
'Fast sound' is found at high frequencies
NMR relaxation time is very small at low temperatures
The NMR shift increases to a maximum at low (supercool) temperatures
The refractive index of water has a maximum value
The change in volume as liquid changes to gas is very large

Material anomalies M1-M12

No aqueous solution is ideal
D2O and T2O differ significantly from H2O
Liquid H2O and D2O differ significantly in their phase behavior
The mean kinetic energy of water's hydrogen atoms increases at low temperature
Solutes have varying effects on water's properties
Non-polar gases solubility decreases with temperature
The dielectric constant of water is high
The dielectric constant shows a temperature maximum
Proton and hydroxide ion mobilities are anomalously fast
The electrical conductivity of water rises to a maximum
Acidity constants of weak acids show temperature minima
X-ray diffraction shows an unusually detailed structure
Under high pressure water molecules move apart

Thermodynamic anomalies T1-T11

The heat of fusion of water exhibits a maximum at -17°C
Water has higher specific heat capacity than ice or steam
The specific heat capacity (CP and CV) is unusually high
The specific heat capacity CP has a minimum at 36°
The specific heat capacity (CP) has a maximum
The specific heat capacity (CP) has a pressure minimum
The heat capacity (CV) has a maximum
High heat of vaporization
High heat of sublimation
High entropy of vaporization
The thermal conductivity of water is high

Physical anomalies F1-F9

Water has unusually high viscosity
Large viscosity increase as the temperature is lowered
Water's viscosity decreases with pressure below 33°C
Large diffusion decrease as the temperature is lowered
The self-diffusion of water increases with the density
The thermal diffusivity rises to a maximum at about 0.8 GPa
Water has unusually high surface tension
Some salts give a surface tension minimum; the Jones-Ray effect
Some salts prevent the coalescence of small bubbles

Properties of water and heavy water (112 KB)

Short properties list for liquid H2O

Changes in some properties with temperature (-30°C - 100°C)

Changes in some further properties with temperature (0°C - 373°C)

Important constants and conversion factors

Unexplained properties of water

Vapor pressure-Temperature behavior

Pressure-Temperature-Density behavior

Volume-Temperature behavior

Temperature-viscosity behavior

Water molecular models

Water model parameterization

Water model descriptions
Water model properties

Water clustering in liquid water

 (H2O)8 equilibria animation

Overview of the structuring in liquid water

Water clustering
Cluster and H-bond lifetimes are independent
Icosahedral water cluster

Introduction to water clustering

A brief history of water clusters

Outline of methods for investigating water structure

Why different methods give different water structures?
Dielectric spectroscopy
Diffraction methods
Modeling
Nuclear Magnetic Resonance (NMR)
Physical properties
Vibrational spectra
X-Ray spectroscopy

Icosahedral (H2O)280 cluster Chime animation

Tetrahedral (H2O)14 cluster Chime animation

The icosahedral (H2O)280 water clusters

Tetrahedral units
Icosahedral clusters
Cluster equilibria
Cluster density
Sub-structures of the icosahedral water cluster
Connectivity map of the water icosahedron

Supercluster ((H2O)280)13 Chime animation

Cluster puckering Chime animation

Icosahedral super cluster

Water cluster equilibria, puckering and temperature effects

Tetrahedra cluster Chime animation

Bicyclo-octamers cluster Chime animation

Water icosahedral cluster architecture

Explanation of water cluster equilibria using animated gifs

Spherical coordinates of the icosahedral water clusters

Shell radii and occupancy of the icosahedral water clusters

Superstrand Chime animation

Alternative icosahedral clusters Chime animation

Alternative tetrahedral clusters Chime animation

 Cavities and networks,Chime animation

 Clathrate-like, Chime animation

Superstrands of water icosahedral clusters

Alternative icosahedral clustering of water

Alternative tetrahedral clustering of water

Water cluster architecture, based on gas clathrates

Paper model of an icosahedral water structure

Evidence for icosahedral water clusters

The radial distribution function
Other support from diffraction data
Support from clathrate structures
Evidence from amorphous ice and low density water
Other evidence

Water cluster conclusions

Hydration

Protein hydration

The contribution of water to protein structure
Water in protein recognition and binding

Protein folding and denaturation
Protein folding
Protein denaturation

Nucleic acid hydration

DNA hydration
DNA processing

Inositol Chime animation

Cyclodextrin Chime animation

Sugar hydration

Aqueous properties of the cyclodextrins

Polysaccharide hydration
Hydration
Alternatives for defining bound and unbound water
Polar effects, for example, α-D-galacturonic acid
Weak hydrogen bonding, for example, α-L-arabinofuranose
Strong hydrogen bonding, for example, β-1-4-linked D-xylose
Hydrophobic effects, for example, β-1-4-linked D-xylose
Effects of other solutes: non-ionic
Effects of other solutes: ionic
Conclusions concerning polysaccharide hydration

Introduction to polysaccharides

Chart showing the furan pseudorotational angles

Hydrocolloids and gums

Hydrocolloid polymers

Polyelectrolytes

Mixtures of hydrocolloids
Effect on viscosity
Hydrocolloid action

Agar Chime animation

Alginate Chime animation

Arabinoxylan Chime animation

Carrageenan Chime animation

CMC Chime animation

Cellulose Chime animation

Curdlan Chime animation

Gelatin Chime animation

Agar

Alginate

Arabinoxylan

Carrageenan

Carboxymethylcellulose

Cellulose

Curdlan

Gelatin

Gellan

β-Glucan Chime animation

β-Glucan

Gum arabic

Guar gum Chime animation

Locust bean gum Chime animation

Pectin Chime animation

Starch Chime animation

Xanthan gum Chime animation

Guar gum

Locust bean gum

Pectin

Starch

Xanthan gum

Hydrocolloid rheology

Viscosity
Viscoelasticity
Structural effects
Further rheological terminology

Hydrocolloids and health (Dietary fiber)

Dietary fiber
Colonic Fermentation
Water-holding capacity (WHC)
Viscosity and gel formation
Binding to bile acids

Ion hydration and aqueous solutions of salts

Methods for determining ion hydration
Water clustering around ions

SO42 cluster Chime animation

Sulfate and other large anions

The Hofmeister series

H3O+ magic number cluster Chime animation 

The H3O+ magic number cluster ions

Water clustering around the SO42- cluster

CO2 cluster Chime animation

Water clustering around the CO2 cluster

Kosmotropes and chaotropes 

Definitions of kosmotropes and chaotropes

Ionic kosmotropes and chaotropes
Non-ionic kosmotropes and chaotropes
α,α-Trehalose

Hydrophobic hydration

The hydrophobic effect
Extensive hydrophobic interfaces
Solubility effects
Salting-out and salting-in
Alcoholic solutions

Carboxylate link Chime animation

Intracellular water

Intracellular solutions contain more K+ ions
Membranes help create a tendency towards low density water in cells
The effect of intracellular protein on water structuring
The importance of protein carboxylate groups
The importance of protein mobility
Cooperative conversion of the water structuring
Actin, tubulins and the intermediate filaments

Water and life
Can life exist without water?
Consequences of changes in water’s hydrogen bond strength
Estimating the effect of changes in water hydrogen bond strength
Effect of water hydrogen bond strength on melting and boiling point
Effect of hydrogen bond strength on the temperature of maximum density
Effect of water hydrogen bond strength on kosmotropes and chaotropes
Effect of water hydrogen bond strength on its ionization
Effect of water hydrogen bond strength on biomolecule hydration
Effect of water hydrogen bond strength on its other physical properties
Conclusions concerning water and life

Water and health

Water content
Water balance
Water requirements
Water roles
Hydration
Water for drinking

Magnetic and electric effects on water

Electric effects on water
Magnetic effects on water
Electromagnetic effects on water
Other related effects

Water and microwaves

Dielectric loss
Effect of salt
Electromagnetic penetration

Dielectric constant and polarization

Background information and definitions
Polarization and polarizability
Refractive index

The complex dielectric permittivity behavior of water

The complex dielectric permittivity
Polarization

Water activity

Colligative properties of water

Overview of colligative properties
Vapor pressure lowering : CaCl2
Freezing point depression : examples : Glucose : Urea : Ethanol : NaCl : CaCl2
Boiling point elevation : Glucose
Osmotic pressure
Self-generation of osmotic pressure at interfaces

Aqueous biphasic systems

Polyoxomolybdate systems

{Mo132} nanodrop Chime animation

 nanodrop + fullerene, Chime animation

{Mo154} nanowheel Chime animation

{Mo132} nanocapsule and aqueous nanodrop

Molybdenum blue {Mo154} nanowheel

How does the {Mo154} nanowheel hydrate?
How do the nanowheels form large spherical clusters?

 Single C60, Chime animation

(C60)13 cluster, Chime animation

Aqueous solutions of fuillerenes, C60 and C70

Frequently asked questions concerning liquid water

How can hot water freeze quicker than cold water?

Can increasing pressure prevent water from freezing?

Is water good for you?

Is water blue?

Why does salt lower the freezing point of water?

Does water have a memory?

Does magnetic descaling of water work?

How can a liquid have a structure?

Does the radial distribution peak at about 3.7 Å exist?

Is there fine structure in the radial distribution function?

Do interstitial water molecules exist?

Icosahedral clustering and the two-state mixture model?

Water-related material

Homeopathy

What ist homeopathy?

Published evidence for and against homeopathy
Homeopathic solutions
Does homeopathy work?

Memory of water

Does water have memory?

Is water special?
Does the glassware matter?
Is gas important?
Does dilution happen as predicted?
Solutions are more complex than expected
Possible scenarios for the memory effect in homeopathic solutions

'Polywater', declustered water and other waters

Polywater
IE
HHO
Neowater
Clustered and 'declustered' water
Peroxide and radical production in water

Fullerane Chime animation

Platonic solids Java animation

Novel fulleranes

Platonic solids and water

Contributed papers

 pdf file

J. G. Watterson, Enzyme function: random events or coherent

action?

Book reviews

Aqueous systems at elevated temperatures and pressures

Handbook of refractive index and dispersion of water for scientists and engineers

References

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1301 - 1400

1401 - 1500

1501 - 1600

1601 - 1700

1701 - 1800

Visitor's Book, recent postings

Visitor's Book archive, 2000-2003

Visitor's Book archive, 2004-2006

Add to Visitor's Book

 Links with animation

 Earlier publications

 Teaching

 Family

 Poem

Water related links

Martin Chaplin CV

Haiku

Site news

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This page was last updated by Martin Chaplin on 1 February, 2012


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