What Ag-Biotech
Scientists
Don't Usually Talk About In Public
www.btinternet.com/~nlpwessex/Documents/ISBreport.htm
GE Methods - 'More an
art than a science'
"....due
to a lack
of understanding
of the underlying molecular mechanisms of transgene introduction
and integration, plant transformation [by genetic engineering]
remains more
an art than a science.
All of the three main techniques used for plant transformation,
Agrobacterium-mediated, protoplast, and particle bombardment
transformation, result in unpredictable integration of
transgenes. This has led to concerns that transformation might
indirectly alter the expression of other genes, resulting in a
toxic or allergenic phenotype.... attempts have been made to
develop a system for targeted transgene insertion.... however,
these efforts have yielded inconsistent results, making them
unsuitable for commercial application."
TRANSGENESBY NO EASY MEANS
Information Systems for Biotechnology
News Report, February 2002
".....conventional
breeding is limited to the genes (the gene pool) from the same
species or closely related species; whereas for genetic
modification, genes can be taken from viruses, bacteria, unrelated plants, animals
(including humans) and made synthetically..... most [GM plant]
gene constructs contain some sequences derived from plant
pathogens..."
Dale (John
Innes Centre) et al
Transgenic Plant Research 1998, 277 - 285
".......The
area of concern specific to viral transgenes [in GM crops] is the
potential risks on any interactions between the viral or
virus-related sequences being expressed from the transgene and
another virus superinfecting that plant. Three main scenarios are
usually considered: synergism, recombination and
heteroencapsidation..... It is generally considered that
recombination plays an important role in the evolution of RNA
viruses (see refs. 2023). Evidence is now forthcoming of
recombination between superinfecting viral RNA and RNA expressed
from a transgene (24) through the aberrant homologous
recombination mechanism. ...... It is difficult to devise detailed
protocols for the detection of recombinants produced in the field..... There are several examples of
heteroencapsidation in transgenic plants, both between viruses of
the same group (27,28), and between unrelated viruses (29). .....
The main question to be addressed is whether the risk on field
release of the transgenic plant is significantly more than the
risk from the nontransgenic plant .... It is likely that it will
take some time for a full risk assessment on the viral transgenic
plants to be performed and commercial and other pressures will be
very strong for field release..... For small-scale releases, it
is relatively easy to design monitoring procedures for analyzing
pollen flow into related weed species and for detecting
heteroencapsidants or recombinants. This will be much more
difficult, if
not impossible,
for large-scale releases, in which the approach should be to
educate farmers and extension service personnel to identify any
unusual event that might be associated with transgenic plants.
This will be the challenge for the future....."
Hull R. (John Innes Centre)
'Detection of Risks Associated with Coat Protein Transgenics',
Methods in
Molecular Biology: Plant Virology Protocols: from Virus Isolation
to Transgenic Resistance. New Jersey, Humana Press Inc. 81,
574-555, (1998)
"....
the technology is quite radical... it requires the public,
actually, to have quite a high level of scientific
understanding."
Professor Mike Bevan, John Innes Centre, on GM technology
BBC Farming Today, 22 May 2003
But do the scientists themselves have a high enough level of understanding?
"It's
often said that one aspect of GM is not precise, and that is that
the inserted gene doesn't go to the same place in the genome each
time, and in fact to a degree inserts randomly, and that's true
... what happens in making a new commercial line by GM is you
might have 10,000 or more so called 'events', independent
insertions, and then those candidate GM lines go through a very
rigourous analysis and review by the breeders .... [a] selection
process out of which one or two or three events will emerge that
have all the desired properties of the original variety plus the
new gene inserted and functioning properly and stably. So it's a
sieving process..."
Professor
Christoper Lamb, Director of the John Innes Centre
BBC Farming Today, 22 May 2003
But how rigorous is this sieving process really?
"Not
only does the genetic engineer have little control over this
insertion process but many transgenic constructs, or fragments of
them, may be inserted simultaneously into the same or different
chromosomes.... Not surprisingly this chaotic situation [inherent
in the physical process of genetic modification] routinely
creates plants which are abnormal in comparison to their
conventionally bred counterparts, a fact which is rarely
discussed in public by the scientific community. Clearly such
genetic aberrations are not desirable. Because of their
potentially unwelcome effects, the genetic engineer will then
attempt to filter out those plants which are abnormal. Sometimes
the abnormalities are visibly obvious. For example, the image
below shows seedlings of transgenic tomato plants, where
approximately a quarter have a lethal mutation in the form of
bleached cotyledons [see
web page for photo]....
Such obvious adverse mutations can be easily 'weeded' out. But
what about the abnormalities that cannot be seen by eye? Very
often many of these will go undetected simply because little or
no molecular research has been done as to their existence, nature
and significance. As a recent paper by scientists at the
University of California, Berkeley, (Plant Science 160 (2001)
763772) points out '...no detailed cytogenetic analysis
of transgenic oat plants has been reported. Only a few detailed
reports on cytogenetic analysis of transgenic plants [of any
kind] have been done...' Cytogenetics is the study of the
microscopic structure of chromosomes. The above statement by the
scientists at Berkeley represents one of the franker admissions
in the published literature of the non-scientific nature of
genetic engineering..... The cytogenetic work on the 'particle
bombardment' generated transgenic oats at the University of
California ....describes the much higher frequency of chromosomal
abnormalities in transgenic plants compared with non-transgenic
lines... However, even in this rare published study the authors
confirm that their methodology only permits quantitation of
'gross changes in chromosomal integrity' and that it is 'also
likely that other less visible changes in chromosomal fidelity
occur e.g. mutation, methylation polymorphism'.... Does that
really matter? The Berkeley paper makes it clear that this
....can have important consequences: 'In transgenic [oat]
plants...overall fertility was dramatically reduced by the
transformation [i.e. genetic modification] process... The
phenomenon of reduced fertility or sterility has also been
observed frequently in other transgenic cereals.... sterility and
low fertility in abnormal plants are likely related to
chromosomal damage or instability of chromosome number during
abnormal meiosis...' Plant breeders will claim that such
difficulties can be filtered out by testing in the field. A paper
published by scientists from the US Department of Agriculture and
Monsanto in 1999 concerning transgenic potatoes gives an
indication of the process involved in this: '... transformation
often changes cultivar yield and quality characteristics that are
agronomically important....The gene [introduced through genetic
engineering] itself can affect the plant growth and type
.
Off-type plants can often be identified among new transformants
in tissue culture media by their lack of vigor or by
conformational aberrations
. More subtle vigor and growth
aberration defects that are not obvious at an earlier stage are
often exhibited after plantlets are transferred from soil flats
to the field
In our experience with potatoes
[although]
growth aberration is usually associated with poor vigor, it does
sometimes occur in vigorous lines...' ...So obvious problems are
filtered out. Unfortunately, the less obvious are not. This is
already clear from the experience with the world's most widely
planted GM crop, 'Roundup Ready' soya. Only after
commercialisation was it discovered that additional DNA of
unknown origin had been inadvertently incorporated within the
genome of the new organism. More importantly it is now considered
that the process of genetic modification in this case has lead to
the disruption of other aspects of
the soya plant's functioning resulting in reduced yields for farmers compared to
conventionally bred sister lines. Whilst this unwelcome effect
may be primarily a problem for soya farmers, who is to say what
the long term consequences of such genetic distortions may be in
the future for human health in this or any other GM food? Unfortunately, as the Berkeley study
indicates, the commercial interests now responsible for funding
much of the development of transgenic technology do not have a
strong inclination to carry out and publish even the most basic
cytogenetic analysis...
It is these less visible changes beyond the current analytical
capacity of science (or at least science as it is commonly
practised), which pose the greatest threat to the long-term
sustainability of food and agriculture; firstly because they are
difficult to detect; and secondly because their meaning is not
yet understood. The
fundamental conceptual error made by large parts of the
scientific community in this situation is to try to attempt
transgenics before achieving competency in genomics . The more
genomics is understood the more science will inevitably learn
about why the short term excitement over the 'out-of-context'
methodologies of transgenics are a recipe for long-term regret.
Until then the principal foundation for transgenic technology
will continue to be conjecture, not rigorous science."
Tearing Down
Biotech's 'Berlin Wall'
The Fundamental Scientific
Error of Pursuing Transgenics Before Competency in Genomics
NLPWessex, 4 May 2003
Click here for definitions of some of the technical terms used above and below as defined in: 'A History of Genetically Modified Plants', Paul.F. Lurquin, Columbia University Press 2001 or Henderson's Dictionary of Biological Terms
May 2003
Below is a piece from the biotechnology newsletter ISB NEWS REPORT February 2002 produced at Virginia Polytechnic Institute and State University, USA. It highlights the primitive nature of the technology used in modern agricultural genetic engineering processes and some of the consequences of the techniques used.
The author is Claire Granger, of the Department of Plant Biology, Carnegie Institution of Washington.
The piece is unusual in that it identifies in a relatively detailed fashion many of the technical problems associated with transgenic technology in plant breeding. These are issues that ag-biotech scientists usually do not like to discuss in public. However, this piece is reproduced in a publication unlikely to be read by the general public.
We have also provided below a previous commentary by NLPWessex on another piece published in ISB NEWS where two scientists from New Zealand raise similar issues, again using explicit language.
The processes used in plant genetic engineering are fundamental to the types of risk generated, just as the processes used to generate electricity from power stations are fundamental to the types of risk encountered - as everyone knows post Chernobyl. The risks associciated with a nuclear power station are radically different to those produced by a hydroelectric plant or wind turbine, even though the purpose of both is to create the same product of electricity. Process is fundamental to the generation of risk.
When nuclear power was first developed it was hailed as the saviour of man's energy needs. The promise was that it would produce energy too cheap to meter. Now the nuclear power industry is the only utlility that the UK government has been able to privatise without huge subsidy because of the long term environmental costs associated with such processes. The most recent Energy White Paper provisionally abandons UK commitments to nuclear energy. It has taken 50 years to arrive at this reversal.
It would be regretable if the mistakes that have been made with nuclear technology were to be repeated with biotechnology. Genetic engineering is the most high risk option within the biotechnology sector which therefore raises the question as to why so much emphasis is being placed on it.
Other biotechnologies such as marker assisted selection have a much more favourable risk-benefit profile. Their potential to contribute to the betterment of world agriculture is much higher, and yet they don't come bundled with the risks associated with the genetic engineering processes that are described below.
BSE was an indicator of how serious things can become when new organisms arise in the environment. Viral and bacterial issues are never far removed from genetic engineering technology, whether it is used for pharamaceutical, military, or agricultural purposes. Most GM crops contain genetic sequences taken from viral or bacterial pathogens.
Combining such elements with the primitive and essentially random methods of current genetic engineering means it can only be a matter of time before such risks are converted into an actual hazard.
NATURAL LAW PARTY WESSEX
nlpwessex@bigfoot.com
www.btinternet.com/~nlpwessex
EXTRACT FROM
http://www.isb.vt.edu/news/2002/news02.feb.html#feb0202
INFORMATION SYSTEMS FOR BIOTECHNOLOGY
ISB NEWS REPORT
February 2002
COVERING AGRICULTURAL AND ENVIRONMENTAL BIOTECHNOLOGY DEVELOPMENTS
PLANT RESEARCH NEWS
TRANSGENESBY NO EASY MEANS
The current widespread application of genetic engineering to crop species is largely due to the ease of plant transformation. Plant transformation, the process of introducing a foreign or engineered DNA element into the native genome of a plant, has been successfully performed for almost 20 years. However, due to a lack of understanding of the underlying molecular mechanisms of transgene introduction and integration, plant transformation remains more an art than a science. All of the three main techniques used for plant transformation, Agrobacterium-mediated, protoplast, and particle bombardment transformation, result in unpredictable integration of transgenes. This has led to concerns that transformation might indirectly alter the expression of other genes, resulting in a toxic or allergenic phenotype. Fortunately, recent research is expanding our understanding of how introduced genes are integrated at the molecular level during transformation, suggesting strategies for controlling the location and expression of transgenes.
In any plant transformation experiment, the researcher knows that many independent transgenic lines will have to be screened before a line stably expressing a single copy of the transgene is isolated. Frequently, many transgenic plants will contain multiple copies of the transgene, either in the form of tandem repeats at a single locus, or scattered throughout the genome of the plant. This is a problem for two reasons. First, the integration of multiple copies of a transgene has been linked with gene silencing, a poorly understood phenomenon, where the expression of an introduced gene is somehow detected and "shut off" by the plant's cellular machinery. Second, overexpression of the transgene due to multiple copies can prove to be toxic to the plant, leading to poor growth or even no growth. Even if the plant contains only a single copy of the gene, there is no guarantee that it will be expressed correctly. The degree of expression of the transgene can also be determined by the site of insertion, otherwise known as the "positional effect."
The main techniques used for plant transformation can be loosely grouped under two headings: Agrobacterium-mediated transformation and methods that use direct DNA delivery for transformation. Protoplast transformation was the first plant transformation technique developed using direct DNA delivery. In this method, protoplasts derived either directly from plant tissues or from a plant cell suspension culture are induced to take up naked DNA through treatment with membrane permiabilization agents such as polyethylene glycol (PEG) or by electroporation. The method is useful, as it is genotype-independent, but the degree of finesse required for success, along with the high occurrence of spontaneous mutations caused by long periods in tissue culture, restrict the application of the technique to species recalcitrant to other methods of transformation.
A more commonly used method of direct DNA delivery transformation is a method known as microprojectile, particle bombardment, or biolistic transformation. In this method, tiny particles of tungsten or gold are coated with DNA containing the construct of interest. These particles are then "shot" into the plant tissue using gunpowder, gas, compressed air, or other methods of acceleration. The force of the acceleration drives the tiny particles through the wall and membrane of the plant cells, delivering the naked DNA directly into the cells' interiors. The exact mechanism of how the naked DNA then becomes integrated into the plant's genome is unknown, but multiple studies have shown that in the vast majority of cases microprojectile transformation results in the integration of multiple, often rearranged, copies of the transgene. One currently proposed theory suggests that the introduced transgenes are first spliced into arrays by the cells' endogenous machinery before integration into the plant's genome. This theory might partially explain the main drawback of this transformation methodthe high occurrence of genetic rearrangements found in recovered transformants.
Another explanation may be found in the results of a study, reported in Theoretical and Applied Genetics, indicating that microprojectile transformation may involve chromosome breakage and re-ligation. In this study, Svitashev et al. characterized transgenic lines of hexaploid oat, using a combination of phenotype, genotype segregation, Southern blot, and fluorescence in situ hybridization (FISH) analyses.1 Six of the 25 transgene loci examined were associated with rearranged chromosomes. Through Southern blot analysis and FISH performed on metaphase chromosomes, evidence of both chromosomal rearrangement and breakage events could be detected. The authors theorize that this may be the result of physical breakage of the host cell's DNA during particle bombardment or, possibly, the integration event itself. However, these results conflict with the data described in a second, more recent paper in the same journal. Jackson et al. studied 13 independent transgenic wheat lines transformed using microprojectile bombardment.2 The authors used a high-resolution form of FISH to physically map the location and structure of the integrated transgenes. Although the authors found evidence of large, tandem repeats of the transgenes integrated in the plant's genome, they were unable to detect any chromosomal rearrangements associated with the integrated transgenes. Regardless of the exact nature of the mechanism, it seems clear from the data described in these papers that microprojectile transformation often results in transgenic plants with a complex pattern of transgene integration.
Agrobacterium-mediated transformation, the most widely used method of plant transformation, utilizes the natural ability of the plant pathogen, Agrobacterium tumefaciens, to transfer DNA sequences from a particular segment of an endogenous plasmid within the bacterium to the nuclear genome of the plant. This segment, known as the T-DNA, usually includes one or two genes of interest, as well as a marker gene. This method is widely favored due to its ease of use and low cost. Unfortunately, the restricted host range of the bacterium meant that some dicot and most monocot species were, until recently, incompatible with the technique. However, the development of new, supervirulent forms of the plasmid vector and species-specific pretreatments has led to a dramatic expansion in the number of species transformed using this technique. Another reason for the popularity of this method is that the T-DNA usually seems to integrate in transcriptionally active regions of the plant genome, increasing the likelihood that the transgene will be expressed.
However, it is not uncommon for Agrobacterium-mediated transformation to result in the integration of multiple copies of the transgene in the form of tandem repeats. Tandem repeats resulting from T-DNA insertion have been reported and investigated in a number of crop species. These types of repeats can be difficult to detect by Southern blot, since they tend to integrate at a single location in the plant genome. In a recent paper published in Molecular and General Genetics, Kumar and Fladung reported using rpPCR, a method that utilizes primer pairs oriented in opposite directions, to identify tandem repeats in 45 transgenic aspen and hybrid aspen lines transformed with six different constructs.3 All the transgenic lines were generated through standard Agrobacterium-mediated transformation. In the lines examined, 21% contained multiple repeats of the transgene; however the organization of the repeats consisted of both direct and inverted repeats. Some of the lines were also found to contain "filler" DNA between the repeated T-DNAs, ranging from four to almost 300 base pairs. Interestingly, the authors found that all of the direct repeats contained identical residual right-border repeat sequences. They speculate that this sequence, combined with the mechanism of T-DNA insertion, is responsible for the formation of direct repeats. However, a single mechanism is unlikely to account for all the different repeat structures seen resulting from Agrobacterium-mediated transformation.
Currently, transgene integration into the host genome is essentially random, regardless of the method used to perform the transformation. As a result, attempts have been made to develop a system for targeted transgene insertion, either through the use of scaffold attachment sites or through the introduction of elements of a homologous recombination system, such as the Cre/lox system. To date, however, these efforts have yielded inconsistent results, making them unsuitable for commercial application. Nevertheless, these technologies are making great advances, and it is hoped that, combined with the increasing understanding of the mechanisms of transgene integration, it will soon be possible to precisely and consistently engineer plants to express a single copy of an introduced gene.
Sources
1. Svitashev S, Ananiev E, Pawlowski WP, and Somers DA. 2000. Association of transgene integration sites with chromosome rearrangements in hexaploid oat. Theoretical and Applied Genetics 100: 872-880.
2. Jackson SA, Zhang P, Chen WP, Phillips RL, Friebe B, Muthukrishnan S, and Gill BS. 2001. High-resolution structural analysis of biolistic transgene integration into the genome of wheat. Theoretical and Applied Genetics 103: 56-62.
3. Kumar S and Fladung M. 2000. Transgene repeats in aspen: molecular characterisation suggests simultaneous integration of independent T-DNAs into receptive hotspots in the host genome. Molecular and General Genetics 264: 20-28.
Claire Granger
Biologist
alesia_sun@yahoo.com
http://www.btinternet.com/~nlpwessex/Documents/gmdeception.htm
Population duped by genetic engineers
"...GM
techniques which in the precise and targeted way bring in a
couple of genes that you know what they do and you know where
they are is vastly safer, vast, vastly more controlled than this
so-called conventional breeding...."
Sir
Robert May, UK Government Chief Scientist 1995 - 2000, and
current President of the Royal Society, UK
(BBC interview 9th March 2000)
July 2001
The biotechnology sector 'ISB News Report' for July 2001
includes a revealing piece by two biotechnology consultants from
New Zealand which by default exposes the degree to which the
technical risks associated with genetic engineering have been
regularly misrepresented by the scientific community.
Constantly we hear the refrain about how 'precise' genetic
engineering is. But this claim is not supported by the facts and
many governmental advisers on GM biosafety have been 'taken in'
by it.
The purpose of the New Zealand consultants' report is to highlight possible future technical improvements in order to reduce the lack of precision and control prevalent in current genetic engineering techniques. However, in so doing they reveal in some detail the technical basis for the inherent risks associated with those genetically engineered organisms which have already been approved.
Below are some of the comments made by the article's authors Kieran Elborough and Zac Hanley in relation to the technology used to create the GMOs that are already being released into the global environment and food chain:
However, perhaps the most relevant comment by these authors is their contrastingly different description of the overwhelmingly sophisticated and precise operation of system functioning in natural non-genetically engineered organisms:
As the authors' piece makes clear it is exactly this evolutionarily necessary precision which is typically absent from the processes of genetic engineering currently being used to modify the world's biological environment. This dangerous combination of scientific ignorance and technological crudity lies at the very heart of an irresponsible and commercially driven genetic engineering stampede which is fuelled by the irresistible lure of monopoly-generating intellectual property rights. It is a stampede which specifically evades even the most primitive consideration of the basic evolutionary context of biological systems.
If the analysis by Elborough and Hanley is correct (and it is
already well supported by peer-reviewed published scientific
literature - see footnotes) it is difficult not
to come to the conclusion that the general population as a whole
- including numerous governmental advisers - has been
deliberately deceived by the more influential members of the
genetic engineering community.
It seems most likely that this apparent process of deception has
been entered into purely to protect investment in an area of
infant science whose use in applied technology has at the very
least been introduced in a scandalously premature fashion. In
reality, however, it is clear that even the basic conceptual
thinking underpinning the development of genetic engineering is
wholy misguided.
As part of this process it appears that an attempt has been made to simultaneously dupe both the public and their political representatives - always assuming, that is, that the latter have not been consciously compliant. It can only be a matter of time, however, before those elements of the scientific community which have encouraged such distortions of scientific knowledge are brought to account.
NATURAL
LAW PARTY WESSEX
nlpwessex@bigfoot.com
www.btinternet.com/~nlpwessex
Footnotes:
1. Full 'ISB NEWS' July 2001 issue available at http://www.isb.vt.edu/news/2001/news01.Jul.html.
2. Related
material has also been published in peer-reviewed scientific
journals by Europe's leading plant biotechnology laboratory, the
John Innes Centre. See: www.btinternet.com/~nlpwessex/Documents/gmrisk.htm
www.btinternet.com/~nlpwessex/Documents/compliance.htm
www.btinternet.com/~nlpwessex/Documents/camv.htm
"In a recent survey of at
least thirty companies developing transgenic plants for use in
agriculture, all companies observed some transgene instability
........... In a recent study in our laboratory, one hundred
Brassica napus [oilseed rape] transgenic lines were produced and
half of them displayed unstable or unusual transgene
behaviour....."
Dale
et al (1998) Transgene expression and stability in Brassica. ACTA
Horticulturae 459, 167-171
3. GE methods disturb rice
genome: Plant Cell Reports Volume 20 Issue 4 (2001) pp 325-330
http://link.springer.de/link/service/journals/00299/bibs/1020004/10200325.htm
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"The
fundamental conceptual error made by large parts of the
scientific community in this situation is to try to attempt
transgenics before achieving competency in genomics . The more
genomics is understood the more science will inevitably learn
about why the short term excitement over the 'out-of-context'
methodologies of transgenics are a recipe for long-term regret.
Until then the principal foundation for transgenic technology
will continue to be conjecture, not rigorous science."
Tearing Down
Biotech's 'Berlin Wall'
The Fundamental Scientific
Error of Pursuing Transgenics Before Competency in Genomics
NLPWessex, 4 May 2003
"GM
is only one easily recongnised byproduct of genetic research. The
quiet revolution is happening in gene mapping ['genomics'],
helping us understand crops better. That is up and running and
could have a far greater impact on agriculture.... There really are no downsides, particularly
in terms of public perception... [By contrast in the case
of GMOs] there are public perception problems and the technology
itself is still not optimised, with antibiotic and herbicide
resistance genes still needed and bits of bacterial DNA hanging
about. Whether that poses any danger is debatable, but it is not
desirable."
Professor
John Snape, John Innes Centre
'Gene mapping the friendly face of GM technology'
Farmers Weekly, 1 March
2002, p54
"From a scientific
perspective, the public argument about genetically-modified
organisms, I think, will soon be a thing of the past. The science
has moved on and we're now in the genomics era."
Professor Bob Goodman
Former head of research and development at Calgene, creators of
the flavr savr tomato, the world's first GM food
Annual Meeting of the American Association for the
Advancement of Science, 18 February 2001
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